PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G343400.1.p
Common NamePRUPE_ppa008172mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 343aa    MW: 36020.5 Da    PI: 6.044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G343400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10191235554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Prupe.6G343400.1.p 191 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 235
                         99***********************8.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-15184245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-11184240No hitNo description
PROSITE profilePS5088816.526186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15188246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7191235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAGNPPEGLG DDFFEQILAV PPSYSTGGAD SAGGGYGDVG SMPMVLQLGS GGSSSAGGGG  60
GGGSGGGGYR GVGMGMGMPL GLNLEQGGFI GQERFRELRE EVEANTNNNI NTPNVSASVS  120
SAMNERDSVH MTNLFPAFGH LQNHSLRPTP PPPQPHQFHS QPSPGPVAAV HHPPAIRPRV  180
RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPSCNKTD RAAMLDEIVD YVKFLRLQVK  240
VLSMSRLGGA GAVAQLVADV PLSAVEGEGI EGGTNQQAWE KWSNDGTEQQ VAKLMEEDVG  300
AAMQFLQAKA LCIMPISLAP AIFRTHQPDA TTLVKPESNS SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.3970.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272182e-35AB627218.1 Malus x domestica mRNA, microsatellite: MEST049, clone: FLW01_46_C11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205486.10.0hypothetical protein PRUPE_ppa008172mg
SwissprotO227682e-86UNE12_ARATH; Transcription factor UNE12
TrEMBLM5WIQ20.0M5WIQ2_PRUPE; Uncharacterized protein
STRINGPOPTR_0005s05500.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-60bHLH family protein